MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-1397

Family name MIR-1397 (all species)
Seed GCAUUGC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-1397
Paralogues
Orthologues Aca-Mir-1397  Ami-Mir-1397  Gga-Mir-1397  Gja-Mir-1397  Oan-Mir-1397  Pbv-Mir-1397  Sha-Mir-1397  Spt-Mir-1397  Tgu-Mir-1397 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(chrPic1)
JH584466: 11772073-11772130 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGUCACUGAGAAAGUGCGAUGUGUGCAUUGCAUUGCGACGGGUUACAUCACUGGUCGUAACAUGAUGUAACCCAACGCAGCAUGAUGUAAGCGUCGUGAUACAUUGGAGAUUUAAA
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Structure
        10          20        30        40        50        
AAAGUCACUGAGAAAGU--|      G       CA     AC           CUGGU 
                   GCGAUGU UGCAUUG  UUGCG  GGGUUACAUCA     C
                   UGCUGCG AUGUAGU  GACGC  CCCAAUGUAGU     G
AAAUUUAGAGGUUACAUAG^      A       AC     AA           ACAAU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-1397_5p

mirBase accessionMIMAT0037915
Sequence
0- UGCAUUGCGACGGGUUACAUCA -22
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Star sequence

Cpi-Mir-1397_3p* (predicted)

mirBase accessionNone
Sequence
37- UGUAACCCAACGCAGCAUGAU -58
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