MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-192-P1

Family name MIR-192 (all species)
Seed UGACCUA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-215
Paralogues Cpi-Mir-192-P2 
Orthologues Aca-Mir-192-P1  Ami-Mir-192-P1  Bta-Mir-192-P1  Cfa-Mir-192-P1  Cli-Mir-192-P1  Cmi-Mir-192-P1  Cpo-Mir-192-P1  Dno-Mir-192-P1  Ebu-Mir-192-o1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mdo-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Pma-Mir-192-o1  Rno-Mir-192-P1  Spt-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xla-Mir-192-P1a  Xla-Mir-192-P1b  Xtr-Mir-192-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584820: 1569225-1569285 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-192-P1)
Mir-194-P1 JH584820: 1568908-1568963 [+] UCSC Ensembl
Mir-192-P1 JH584820: 1569225-1569285 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUUUUAUUAAGAACUGGUGUACAGGAAAAUGACCUAUGAAUUGACAGACUGUGUCUUCUAAAUUUGUCUGUCACUUCUGUAGGCCAAUAUUCUGCAUGCCUUAACUGCUUUGGAACCAG
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Structure
        10          20        30         40        50         
ACAUUUUAUUAAGAACU--     A     AAA  A     -|  U        UGUGUCU 
                   GGUGU CAGGA   UG CCUAU GAA UGACAGAC       U
                   CCGUA GUCUU   AC GGAUG CUU ACUGUCUG       C
GACCAAGGUUUCGUCAAUU     C     AUA  C     U^  C        UUUAAAU 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThe Dicer cut is -1 relative to most other vertebrates examined.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-192-P1_5p

mirBase accessionMIMAT0037841
Sequence
0- AUGACCUAUGAAUUGACAGAC -21
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Star sequence

Cpi-Mir-192-P1_3p*

mirBase accessionMIMAT0037842
Sequence
39- CUGUCACUUCUGUAGGCCAAUA -61
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