MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-196-P1

Family name MIR-196 (all species)
Seed AGGUAGU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-196-3
Paralogues Cpi-Mir-196-P3  Cpi-Mir-196-P4 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xtr-Mir-196-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(chrPic1)		 JH584682: 644036-644094 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUAGAGCGCUGAGAACUGUUCUGUAGUUUAGGUAGUUUCAUGUUGUUGGGGCUCCACCUUUCUCUCUGCAGCACGAAACUGCCUUAAUUACUUCAGUUGAAAUCAUCACCAGGUAUG
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Structure
        10            20        30        40        50         
AAUUAGAGCGCUGAGAA----|  UUCU      U          A      U    CUCCA 
                     CUG    GUAGUU AGGUAGUUUC UGUUGU GGGG     \
                     GAC    CAUUAA UCCGUCAAAG ACGACG CUCU     C
GUAUGGACCACUACUAAAGUU^  UU--      U          C      U    CUUUC 
       110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-196-P1_5p
mirBase accessionMIMAT0037815
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGGG -23
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Star sequence

Cpi-Mir-196-P1_3p* (predicted)
mirBase accessionNone
Sequence 
36- UCUGCAGCACGAAACUGCCUUAA -59
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