MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-2188

Family name MIR-2188 (all species)
Seed AGGUCCA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-2188
Paralogues
Orthologues Aca-Mir-2188  Ami-Mir-2188  Cli-Mir-2188  Cmi-Mir-2188  Dre-Mir-2188  Gga-Mir-2188  Gja-Mir-2188  Gmo-Mir-2188  Lch-Mir-2188  Loc-Mir-2188  Mal-Mir-2188  Mdo-Mir-2188  Mun-Mir-2188  Oan-Mir-2188  Pbv-Mir-2188  Sha-Mir-2188  Spt-Mir-2188  Sto-Mir-2188  Tgu-Mir-2188  Tni-Mir-2188  Xla-Mir-2188-P1  Xla-Mir-2188-P2  Xtr-Mir-2188 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(chrPic1)		 JH584511: 3220744-3220802 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUCCUGGGGAAUAUCAAACCUGUGGGAAAGGUCCAACCUCACAUGUCCUGUAUGUAAUAAAGGGGAUGUAUGUGGUCAGACCUAUCCCACAGGCCCUGUAUUCUUACACAAAUGCA
Get precursor sequence
Structure
        10        20          30        40        50         
UUCCUCCUGGGGAAUAUCAAA--|        A     CA   U  C       GUAUGU 
                       CCUGUGGGA AGGUC  ACC CA AUGUCCU      \
                       GGACACCCU UCCAG  UGG GU UGUAGGG      A
ACGUAAACACAUUCUUAUGUCCC^        A     AC   U  A       GAAAUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe Dicer cut is +1 relative to all other vertebrates examined.
3' NTU No
MotifsNo
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-2188_5p
mirBase accessionMIMAT0037943
Sequence 
0- AAGGUCCAACCUCACAUGUCCU -22
Get sequence
Star sequence

Cpi-Mir-2188_3p*
mirBase accessionMIMAT0037944
Sequence 
37- GAUGUAUGUGGUCAGACCUAUC -59
Get sequence