| MirGeneDB ID | Cpi-Mir-9580 |
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| Family name |
MIR-9580 (all species) |
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| Seed |
AUGGGGA |
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| Species |
Western painted turtle (Chrysemys picta bellii) |
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| MiRBase ID |
cpi-mir-9580
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. picta
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| Node of Origin (family) |
C. picta
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Genome context
(chrPic1) |
JH584581: 6053420-6053478 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAACUCUGAAGUCUGUGGGUAUGCAUACGCUAUGGGGACAAUACUGGCAUAGCUUUAGCACCCUAGCUAUGCCGGCAUAGCCCCAUGGUGUGUAGACUCACCAACAGCAAUGGAAGGGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAACUCUGAAGUCUGUG----| AUGC ACA A UUUAG
GGU AUACGCUAUGGGG AU CUGGCAUAGC C
UCA UGUGUGGUACCCC UA GGCCGUAUCG A
GGGGAAGGUAACGACAACCAC^ GA-- GA- C AUCCC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Cpi-Mir-9580_5p |
| mirBase accession | MIMAT0037956 |
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| Sequence |
0- UAUGGGGACAAUACUGGCAUAGC -23
Get sequence
|
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| Star sequence |
Cpi-Mir-9580_3p* |
| mirBase accession | MIMAT0037957 |
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| Sequence |
37- UAUGCCGGCAUAGCCCCAUGGU -59
Get sequence
|
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