| MirGeneDB ID | Cpi-Mir-9590 |
|---|
| Family name |
MIR-9590 (all species) |
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| Seed |
GUGGUGC |
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| Species |
Western painted turtle (Chrysemys picta bellii) |
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| MiRBase ID |
cpi-mir-9590
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. picta
|
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| Node of Origin (family) |
C. picta
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Genome context
(chrPic1) |
JH584466: 1371325-1371390 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UCUAAAUUUCGGUACAAUGGGCUGAUGUGCAGUGGUGCUGAGAACCUGCAGUUCCCAUUAACUUUAGUGAAAUCUGGAGAUGCUCAGCACUUCUGAACAACAGAUCACUUUUAUCUACAUGCCUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCUAAAUUUCGGUACAA--| GG A G U AAC G UUCCCAUUAA
UG CUG UGU CAG GGUGCUGAG CU CAG C
AC GAC ACA GUC UCACGACUC GA GUC U
AAUCCGUACAUCUAUUUUC^ UA A A U GUA G UAAAGUGAUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Cpi-Mir-9590_5p |
| mirBase accession | MIMAT0037976 |
|---|
| Sequence |
0- AGUGGUGCUGAGAACCUGCAGUU -23
Get sequence
|
|---|
| Star sequence |
Cpi-Mir-9590_3p* |
| mirBase accession | MIMAT0037977 |
|---|
| Sequence |
43- CUGGAGAUGCUCAGCACUUCUGA -66
Get sequence
|
|---|
