| MirGeneDB ID | Cpo-Mir-1296 |
|---|
| Family name |
MIR-1296 (all species) |
|---|
| Seed |
UAGGGCC |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-1296
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-1296
Cfa-Mir-1296
Cja-Mir-1296
Dno-Mir-1296
Eca-Mir-1296
Ete-Mir-1296
Hsa-Mir-1296
Laf-Mir-1296
Mml-Mir-1296
Mmr-Mir-1296
Ocu-Mir-1296
Pab-Mir-1296
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_15: 13768767-13768831 [-]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGAAAUCAACGAAGCACCCACCUAACUGGGUUAGGGCCCUGGCUCCAUCUCCUUUAGGAAAACCUUCUGUGGGGAGUGGGGCUUUGACCCUAACCCAGCUGGGCUGUAAUACUGCUGCAUUUUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGAAAUCAACGAAGCACC- -| A CCCU U UUUAGGAAA
CA CCUA CUGGGUUAGGG GGCUCCA CUCC A
GU GGGU GACCCAAUCCC UCGGGGU GAGG C
UCUUUUACGUCGUCAUAAU C^ C AGUU - GGUGUCUUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Cpo-Mir-1296_5p |
| mirBase accession | MIMAT0047415 |
|---|
| Sequence |
0- UUAGGGCCCUGGCUCCAUCUCC -22
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-1296_3p* |
| mirBase accession | MIMAT0047416 |
|---|
| Sequence |
44- AGUGGGGCUUUGACCCUAACC -65
Get sequence
|
|---|
