MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-506-P1

Family name MIR-506 (all species)
Seed AGUGCGC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-506
Paralogues Cpo-Mir-506-o1  Cpo-Mir-506-o2  Cpo-Mir-506-o3  Cpo-Mir-506-o4  Cpo-Mir-506-o5  Cpo-Mir-506-o6  Cpo-Mir-506-o7a  Cpo-Mir-506-o7b  Cpo-Mir-506-o7c  Cpo-Mir-506-o8  Cpo-Mir-506-P2a  Cpo-Mir-506-P2b  Cpo-Mir-506-P2c  Cpo-Mir-506-P6 
Orthologues Bta-Mir-506-P1  Cfa-Mir-506-P1  Dno-Mir-506-P1  Hsa-Mir-506-P1  Mml-Mir-506-P1  Mmu-Mir-506-P1  Ocu-Mir-506-P1  Rno-Mir-506-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_84: 2699627-2699683 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-P1)		 Mir-506-P1 scaffold_84: 2699627-2699683 [+] UCSC
Mir-506-o8 scaffold_84: 2702886-2702945 [+] UCSC
Mir-506-o4 scaffold_84: 2715444-2715500 [+] UCSC
Mir-506-o6 scaffold_84: 2722022-2722078 [+] UCSC
Mir-506-o5 scaffold_84: 2725364-2725420 [+] UCSC
Mir-506-o1 scaffold_84: 2739521-2739577 [+] UCSC
Mir-506-o2 scaffold_84: 2748262-2748318 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCACGUUCAGCCCUACUGUGUGCAGUGCACUACUUGGAAAGGUGCCAUUCAAUAAAUUACAUUAUGAAGUGCGCCUUCCUGAGUAGAGUAACGCUCUACAAGUUCAACUUUUUUGAC
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Structure
        10         20         30        40        50        
CCACGUUCAGCCCUACU-   U-| AG   A     UG A       CA    AUAAAU 
                  GUG  GC  UGC CUACU  G AAGGUGC  UUCA      \
                  CAU  CG  AUG GAUGA  C UUCCGCG  AAGU      U
CAGUUUUUUCAACUUGAA   CU^ CA   A     GU C       UG    AUUACA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cpo-Mir-506-P1_5p*
mirBase accessionMIMAT0047313
Sequence 
0- UACUUGGAAAGGUGCCAUUCA -21
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Mature sequence

Cpo-Mir-506-P1_3p
mirBase accessionMIMAT0047314
Sequence 
36- AAGUGCGCCUUCCUGAGUAGA -57
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