MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-506-P2c

Family name MIR-506 (all species)
Seed AUGGCAC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-507c
Paralogues Cpo-Mir-506-o1  Cpo-Mir-506-o2  Cpo-Mir-506-o3  Cpo-Mir-506-o4  Cpo-Mir-506-o5  Cpo-Mir-506-o6  Cpo-Mir-506-o7a  Cpo-Mir-506-o7b  Cpo-Mir-506-o7c  Cpo-Mir-506-o8  Cpo-Mir-506-P1  Cpo-Mir-506-P2a  Cpo-Mir-506-P2b  Cpo-Mir-506-P6 
Orthologues Dno-Mir-506-P2  Hsa-Mir-506-P2  Mml-Mir-506-P2  Mmu-Mir-506-P2  Ocu-Mir-506-P2  Rno-Mir-506-P2 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_84: 2771646-2771702 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-P2c)
Mir-506-o6 scaffold_84: 2722022-2722078 [+] UCSC
Mir-506-o5 scaffold_84: 2725364-2725420 [+] UCSC
Mir-506-o1 scaffold_84: 2739521-2739577 [+] UCSC
Mir-506-o2 scaffold_84: 2748262-2748318 [+] UCSC
Mir-506-o3 scaffold_84: 2752734-2752794 [+] UCSC
Mir-506-P2a scaffold_84: 2762224-2762281 [+] UCSC
Mir-506-P2b scaffold_84: 2763265-2763322 [+] UCSC
Mir-506-P2c scaffold_84: 2771646-2771702 [+] UCSC
Mir-506-P6 scaffold_84: 2797729-2797786 [+] UCSC
Precursor
(pre-Mir +30nt flank)
ACAGCGUGAGUCAUGCGGUGUGCAGUGCUUCACUUCAUGGAGUGCCAUCCAUGUAUUAAAAGUUUGAAUGGCACUUCUUGAAGUGGGGUAAUGCAUGACAAGUACAGCCUCAGUGCC
Get precursor sequence
Structure
        10          20        30        40        50        
ACAGCGUGAGUCAUGCG-  -|    G            U          C  UGUAUU 
                  GU GUGCA UGCUUCACUUCA GGAGUGCCAU CA      \
                  CA UACGU AUGGGGUGAAGU CUUCACGGUA GU      A
CCGUGACUCCGACAUGAA  G^    A            U          A  UUGAAA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Cpo-Mir-506-P2c_5p*

mirBase accessionMIMAT0047319
Sequence
0- CACUUCAUGGAGUGCCAUCCA -21
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Mature sequence

Cpo-Mir-506-P2c_3p

mirBase accessionMIMAT0047320
Sequence
36- AAUGGCACUUCUUGAAGUGGG -57
Get sequence