MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-506-o1

Family name MIR-506 (all species)
Seed GACUGAA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-509a
Paralogues Cpo-Mir-506-o2  Cpo-Mir-506-o3  Cpo-Mir-506-o4  Cpo-Mir-506-o5  Cpo-Mir-506-o6  Cpo-Mir-506-o7a  Cpo-Mir-506-o7b  Cpo-Mir-506-o7c  Cpo-Mir-506-o8  Cpo-Mir-506-P1  Cpo-Mir-506-P2a  Cpo-Mir-506-P2b  Cpo-Mir-506-P2c  Cpo-Mir-506-P6 
Orthologues Bta-Mir-506-P1  Cfa-Mir-506-P1  Dno-Mir-506-P1  Hsa-Mir-506-P1  Mml-Mir-506-P1  Mmu-Mir-506-P1  Ocu-Mir-506-P1  Rno-Mir-506-P1 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_84: 2739521-2739577 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-o1)
Mir-506-P1 scaffold_84: 2699627-2699683 [+] UCSC
Mir-506-o8 scaffold_84: 2702886-2702945 [+] UCSC
Mir-506-o4 scaffold_84: 2715444-2715500 [+] UCSC
Mir-506-o6 scaffold_84: 2722022-2722078 [+] UCSC
Mir-506-o5 scaffold_84: 2725364-2725420 [+] UCSC
Mir-506-o1 scaffold_84: 2739521-2739577 [+] UCSC
Mir-506-o2 scaffold_84: 2748262-2748318 [+] UCSC
Mir-506-o3 scaffold_84: 2752734-2752794 [+] UCSC
Mir-506-P2a scaffold_84: 2762224-2762281 [+] UCSC
Mir-506-P2b scaffold_84: 2763265-2763322 [+] UCSC
Mir-506-P2c scaffold_84: 2771646-2771702 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UUAGCCUUCAUUGUGCUGUGUGUGAUGCCCUUCUUCAGAGAGUUUUAGUCGUUUGUAAUUAAGUAUGACUGAAGCAUCUGAGGGAGAGUAAUGCAUGCCAUGUACAACGUAUGACUG
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Structure
        10          20        30        40        50        
UUAGCCUUCAUUGUGCU--|      A   C          GA           UUGUA 
                   GUGUGUG UGC CUUCUUCAGA  GUUUUAGUCGU     A
                   CGUACGU AUG GAGGGAGUCU  CGAAGUCAGUA     U
GUCAGUAUGCAACAUGUAC^      A   A          A-           UGAAU 
     110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Cpo-Mir-506-o1_5p*

mirBase accessionMIMAT0047321
Sequence
0- UUCUUCAGAGAGUUUUAGUCGUU -23
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Mature sequence

Cpo-Mir-506-o1_3p

mirBase accessionMIMAT0047322
Sequence
35- UGACUGAAGCAUCUGAGGGAGA -57
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