MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-506-o3

Family name MIR-506 (all species)
Seed AGAAACC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-509c
Paralogues Cpo-Mir-506-o1  Cpo-Mir-506-o2  Cpo-Mir-506-o4  Cpo-Mir-506-o5  Cpo-Mir-506-o6  Cpo-Mir-506-o7a  Cpo-Mir-506-o7b  Cpo-Mir-506-o7c  Cpo-Mir-506-o8  Cpo-Mir-506-P1  Cpo-Mir-506-P2a  Cpo-Mir-506-P2b  Cpo-Mir-506-P2c  Cpo-Mir-506-P6 
Orthologues Bta-Mir-506-P3  Cfa-Mir-506-P3a  Cfa-Mir-506-P3b  Dno-Mir-506-P3  Hsa-Mir-506-P3  Mml-Mir-506-P3  Ocu-Mir-506-P3 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_84: 2752734-2752794 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-o3)
Mir-506-o8 scaffold_84: 2702886-2702945 [+] UCSC
Mir-506-o4 scaffold_84: 2715444-2715500 [+] UCSC
Mir-506-o6 scaffold_84: 2722022-2722078 [+] UCSC
Mir-506-o5 scaffold_84: 2725364-2725420 [+] UCSC
Mir-506-o1 scaffold_84: 2739521-2739577 [+] UCSC
Mir-506-o2 scaffold_84: 2748262-2748318 [+] UCSC
Mir-506-o3 scaffold_84: 2752734-2752794 [+] UCSC
Mir-506-P2a scaffold_84: 2762224-2762281 [+] UCSC
Mir-506-P2b scaffold_84: 2763265-2763322 [+] UCSC
Mir-506-P2c scaffold_84: 2771646-2771702 [+] UCSC
Mir-506-P6 scaffold_84: 2797729-2797786 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCCUGUCCUCCAGCCUGCUGUAUGUGGUACACUACCCCAGAGAGUUUCAAUCGUUUUUAAUUAACUAUGAUAGAAACCUCUGAGGUGGAUUAUCACACAGCAACAUGUGCAAGGGCAACAG
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Structure
        10            20        30        40        50        60
UCCUGUCCUCCAGCCUG----|   AU      CA     C     A     A   GUUUUUA 
                     CUGU  GUGGUA  CUACC CAGAG GUUUC AUC       A
                     GACA  CACUAU  GGUGG GUCUC CAAAG UAG       U
GACAACGGGAACGUGUACAAC^   --      UA     A     -     A   UAUCAAU 
 .       110       100          90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Cpo-Mir-506-o3_5p*

mirBase accessionMIMAT0047325
Sequence
0- ACUACCCCAGAGAGUUUCAAUC -22
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Mature sequence

Cpo-Mir-506-o3_3p

mirBase accessionMIMAT0047326
Sequence
40- UAGAAACCUCUGAGGUGGAUU -61
Get sequence