| MirGeneDB ID | Cpo-Mir-675 |
|---|
| Family name |
MIR-675 (all species) |
|---|
| Seed |
UGUAUGC |
|---|
| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-675
|
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| Paralogues |
|
|---|
| Orthologues |
Cfa-Mir-675
Cja-Mir-675
Dno-Mir-675
Eca-Mir-675
Hsa-Mir-675
Laf-Mir-675
Mml-Mir-675
Mmr-Mir-675
Mmu-Mir-675
Neu-Mir-675
Pab-Mir-675
Rno-Mir-675
Sha-Mir-675
|
|---|
| Node of Origin (locus) |
Theria
|
|---|
| Node of Origin (family) |
Theria
|
|---|
Genome context
(cavPor3) |
scaffold_42: 12522087-12522143 [+]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGUUCCCACACAGCACUGCGGCCCAGGACCUGGCGCGGAGAGGGCCCACAGUGGACUUGGUGACACUGUAUGCCCUAACCGCUCAGCCCCUGGGUCCGGCAUGACAGACAGAACAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUUCCCACACAGCACUG- -| AC C AG CC GACU
CGG CCCAGG CUGG GCGG AGGGC ACAGUG U
GCC GGGUCC GACU CGCC UCCCG UGUCAC G
CGACAAGACAGACAGUACG U^ CC - AA UA AGUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Star sequence |
Cpo-Mir-675_5p* |
| mirBase accession | MIMAT0047373 |
|---|
| Sequence |
0- UGGCGCGGAGAGGGCCCACAGUG -23
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-675_3p |
| mirBase accession | MIMAT0047374 |
|---|
| Sequence |
35- CUGUAUGCCCUAACCGCUCAGC -57
Get sequence
|
|---|
