MirGeneDB ID | Cpo-Mir-760 |
Family name |
MIR-760 (all species) |
Seed |
GGCUCUG |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-760
|
Paralogues |
|
Orthologues |
Bta-Mir-760
Dno-Mir-760
Ete-Mir-760
Hsa-Mir-760
Mml-Mir-760
Mmu-Mir-760
Ocu-Mir-760
Rno-Mir-760
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_2: 19580893-19580952 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CGGGUGAGGCCGCGGCGCAGGGUACGGCGCCCCCCUCAGUCUGCCAGAGCCCGGAUGCCUCAGAAAUUCGGCUCUGGGUCUGUGGGGGACGAAAUGCAACCCAGUCUCCAUUUUCCUGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGGGUGAGGCCGCGGCGCA ACGG---| C U U UG C UGCCU
GGGU CG CCCCC CAG C CCAGAGCC GGA \
CCCA GC GGGGG GUC G GGUCUCGG CUU C
AAGUCCUUUUACCUCUGA- ACGUAAA^ A U U -- - AAAGA
. 110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cpo-Mir-760_5p* (predicted) |
mirBase accession | MIMAT0047383 |
Sequence |
0- CCCCCUCAGUCUGCCAGAGCCCGGA -25
Get sequence
|
Mature sequence |
Cpo-Mir-760_3p (predicted) |
mirBase accession | MIMAT0047384 |
Sequence |
38- CGGCUCUGGGUCUGUGGGGGAC -60
Get sequence
|