MirGeneDB ID | Csc-Mir-279-P14a |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
Csc-Mir-279-P14b
|
Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Efe-Mir-279-o14
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
Node of Origin (locus) |
C. sculpturatus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000671375.1_CSC) |
NW_019384435.1: 45082-45138 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCGCAAGCCGAGGAAUCUCCUGUCACAACGGAUGACUGUGCCUCUGGUCCAUGUGCCUUGUAUCAUGACUAGAUCCACACUCAUCCACUGUGUCGGGAAUCACGACCGACCUUUGUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UCGCAAGCCGAGGAAUC--| U AC C CC C UGCC
UCCUG CACA GGAUGA UGUG UCUGGUC AUG U
AGGGC GUGU CCUACU ACAC AGAUCAG UAC U
UUGUUUCCAGCCAGCACUA^ U CA C CU - UAUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Csc-Mir-279-P14a_5p* |
mirBase accession | None |
Sequence |
0- GAUGACUGUGCCUCUGGUCCAUG -23
Get sequence
|
Mature sequence |
Csc-Mir-279-P14a_3p |
mirBase accession | None |
Sequence |
35- UGACUAGAUCCACACUCAUCCA -57
Get sequence
|