| MirGeneDB ID | Cte-Mir-2707 |
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| Family name |
MIR-2707 (all species) |
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| Seed |
UACUUAU |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-2707
|
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| Paralogues |
|
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| Orthologues |
Efe-Mir-2707-v1
Efe-Mir-2707-v2
Pdu-Mir-2707
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| Node of Origin (locus) |
Pleistoannelida
|
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| Node of Origin (family) |
Pleistoannelida
|
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_105: 375781-375840 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUGGCCAUUGGUGAACUGUGUGUAAAGUGCCUGUCAAGCUGAUUAAGUAUUGAUGCAACACGAUGAAUACUUAUUCAGCUUCUGACAGUUGGUUUCCACAACUGAACAACACAUGCAACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUGGCCAUUGGUGAACUG-- U G GC --| U GAUGCA
UGUG AAA U CUGUCA AGCUGA UAAGUAUU A
ACAC UUU G GACAGU UCGACU AUUCAUAA C
CCAACGUACACAACAAGUCA C G UU CU^ U GUAGCA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Cte-Mir-2707_5p* |
| mirBase accession | None |
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| Sequence |
0- CUGUCAAGCUGAUUAAGUAUUG -22
Get sequence
|
|---|
| Mature sequence |
Cte-Mir-2707_3p |
| mirBase accession | MIMAT0013574 |
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| Sequence |
36- AUACUUAUUCAGCUUCUGACAGUU -60
Get sequence
|
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