MirGeneDB ID | Dma-Mir-2-o1 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
|
Paralogues |
Dma-Mir-2-o2
Dma-Mir-2-P1
Dma-Mir-2-P2
Dma-Mir-2-P3
Dma-Mir-2-P4
|
Orthologues |
Aae-Mir-2-P1-v1
Aae-Mir-2-P1-v2
Bge-Mir-2-P1-v1
Bge-Mir-2-P1-v2
Csc-Mir-2-P1n
Csc-Mir-2-P1o
Dan-Mir-2-P1-v1
Dan-Mir-2-P1-v2
Dme-Mir-2-P1-v1
Dme-Mir-2-P1-v2
Dmo-Mir-2-P1
Dpu-Mir-2-o1
Dpu-Mir-2-P1
Dsi-Mir-2-P1-v1
Dsi-Mir-2-P1-v2
Dya-Mir-2-P1-v1
Dya-Mir-2-P1-v2
Hme-Mir-2-P1-v1
Hme-Mir-2-P1-v2
Isc-Mir-2-P1
Lpo-Mir-2-P1g
Lpo-Mir-2-P1h
Lpo-Mir-2-P1i
Lpo-Mir-2-P1j
Lpo-Mir-2-P1k
Lpo-Mir-2-P1l
Lpo-Mir-2-P1m
Tca-Mir-2-P1-v1
Tca-Mir-2-P1-v2
|
Node of Origin (locus) |
Daphnia
|
Node of Origin (family) |
Protostomia
|
Genome context (DMA_ASM399081) |
NC_046175.1: 6286723-6286816 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUAUGUUUUUCAACAUAGAGUAACGGGACCUAGGAACUACCGCUUGUGGUUGAUUGAAUUGUCGAUUUUUUUAAAUUCUAAUCGGUUCAAUUGUCUUAUUUCUAUCACAGUCGUAGUUACUAGAUACCGAAGCUCUUCCGUCUCACUCACACAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
AUAUGUUUUUCAACAUA--| AA GAC G C U U UUGAAUUGUCGAUUUUUUUAAAU
GAGU CGG CUAG AACUAC GCU GUGGU GA \
CUCG GCC GAUC UUGAUG UGA CACUA CU U
GACACACUCACUCUGCCUU^ AA AUA A C - U UUAUUCUGUUAACUUGGCUAAUC
150 140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Dma-Mir-2-o1_5p* |
mirBase accession | None |
Sequence |
0- UAGGAACUACCGCUUGUGGUUGA -23
Get sequence
|
Mature sequence |
Dma-Mir-2-o1_3p |
mirBase accession | None |
Sequence |
72- UAUCACAGUCGUAGUUACUAGA -94
Get sequence
|