MirGeneDB 2.1
MirGeneDB ID

Dma-Mir-252-P1-v1

Family name MIR-252 (all species)
Seed AAGUACU
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-252-P1-v2  Dma-Mir-252-P2 
Orthologues Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(DMA_ASM399081)		 NC_046174.1: 8936495-8936561 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GACUGAAGACAAAUAUUCCUACCCCGUUCCUAAGUACUCGUGCCGCAGGAGAGAUGUAUUAAUCUGCAAGUUCCUCCUGCUGCUCAAGUUCUUAACUAAUGGUUAUGGAAAAACCAUCGCAUUUAAA
Get precursor sequence
Structure
        10          20        30         40        50        60  
GACUGAAGACAAAUAUU--  UACC     CC-|   U   CGU  C       AGAUGUAUUA 
                   CC    CCGUU   UAAG ACU   GC GCAGGAG          A
                   GG    GGUAA   AUUC UGA   CG CGUCCUC          U
AAAUUUACGCUACCAAAAA  UAUU     UCA^   U   ACU  U       CUUGAACGUC 
     120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-252-P1-v1_5p
mirBase accessionNone
Sequence 
0- UAAGUACUCGUGCCGCAGGAG -21
Get sequence
Star sequence

Dma-Mir-252-P1-v1_3p*
mirBase accessionNone
Sequence 
45- CCUGCUGCUCAAGUUCUUAACU -67
Get sequence