Mir-252-P1-v2

MirGeneDB ID

Dma-Mir-252-P1-v2

Family name

MIR-252 (all species)

Seed

UAAGUAC

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Dma-Mir-252-P1-v1 Dma-Mir-252-P2

Orthologues

Asu-Mir-252-P1 Bfl-Mir-252-P1-v1 Bfl-Mir-252-P1-v2 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Bla-Mir-252-P1-v2 Cbr-Mir-252-P1 Cel-Mir-252-P1 Cgi-Mir-252-P1 Csc-Mir-252-P1 Cte-Mir-252-P1 Dan-Mir-252-P1a Dan-Mir-252-P1b Dme-Mir-252-P1a Dme-Mir-252-P1b Dmo-Mir-252-P1a Dmo-Mir-252-P1b Dpu-Mir-252-P1 Dsi-Mir-252-P1a Dsi-Mir-252-P1b Dya-Mir-252-P1a Dya-Mir-252-P1b Esc-Mir-252-P1 Hme-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lpo-Mir-252-P1c Lpo-Mir-252-P1e Lpo-Mir-252-P1f Npo-Mir-252-P1 Obi-Mir-252-P1 Ovu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Sko-Mir-252-P1 Spu-Mir-252-P1 Tca-Mir-252-P1 Xbo-Mir-252-P1g Xbo-Mir-252-P1h Xbo-Mir-252-P1i

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(DMA_ASM399081)

NC_046174.1: 8936495-8936562 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UGACUGAAGACAAAUAUUCCUACCCCGUUCCUAAGUACUCGUGCCGCAGGAGAGAUGUAUUAAUCUGCAAGUUCCUCCUGCUGCUCAAGUUCUUAACUAAUGGUUAUGGAAAAACCAUCGCAUUUAAA

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Structure

        10         20        30         40        50        60   
UGACUGAAGACAAAUAU-   UACC     CC-|   U   CGU  C       AGAUGUAUUA 
                  UCC    CCGUU   UAAG ACU   GC GCAGGAG          A
                  AGG    GGUAA   AUUC UGA   CG CGUCCUC          U
AAAUUUACGCUACCAAAA   UAUU     UCA^   U   ACU  U       CUUGAACGUC 
      120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Mature sequence

Dma-Mir-252-P1-v2_5p

mirBase accession

None

Sequence

0- CUAAGUACUCGUGCCGCAGGAG -22

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Star sequence

Dma-Mir-252-P1-v2_3p*

mirBase accession

None

Sequence

46- CCUGCUGCUCAAGUUCUUAACU -68

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