MirGeneDB 2.1

MirGeneDB ID

Dma-Novel-2

Family name DMA-NOVEL-2 (all species)
Seed CUGGGUU
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) Daphnia
Node of Origin (family) Daphnia
Genome context
(DMA_ASM399081)
NC_046174.1: 2509619-2509677 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUCUACAGAUAAUUAGCAUUAGUUUGUGUCCAGUUUAACAUAGCCCACAGAUUAUGUACAUUUCUCUGGGUUAUGAUUAAGACUGGGCAAAGACUUCUGCUCAUCAACAGAUAUCCUC
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Structure
        10          20        30          40        50        
AAUCUACAGAUAAUUAG--  UU     G         -   -|        C   UUAUG 
                   CA  AGUUU UGUCCAGUU UAA CAUAGCCCA AGA     \
                   GU  UCAGA ACGGGUCAG AUU GUAUUGGGU UCU     U
CUCCUAUAGACAACUACUC  CU     A         A   A^        C   UUACA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Novel-2_5p*

mirBase accessionNone
Sequence
0- CCAGUUUAACAUAGCCCACAGA -22
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Mature sequence

Dma-Novel-2_3p

mirBase accessionNone
Sequence
35- UCUGGGUUAUGAUUAAGACUGGGC -59
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