MirGeneDB ID | Dno-Mir-28-P2 |
Family name |
MIR-28 (all species) |
Seed |
CGAGGAG |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-151
|
Paralogues |
Dno-Mir-28-P1
Dno-Mir-28-P3
|
Orthologues |
Bta-Mir-28-P2
Cfa-Mir-28-P2
Cpo-Mir-28-P2
Ete-Mir-28-P2
Hsa-Mir-28-P2
Mml-Mir-28-P2
Mmu-Mir-28-P2
Ocu-Mir-28-P2
Rno-Mir-28-P2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (dasNov3) |
JH565273: 691171-691226 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAGAGAGGACUGAAGCACUUUUCCUGCCCUCGAGGAGCUCACAGUCUAGUAUGUCUCCUCCCUACUAGACUGAAGCUCCUUGAGGGCAGGGAUCGUCAUGCUCGCCCGCUGUGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAGAGAGGACUGAAGC--| UU CA UGUCU
AC UUCCUGCCCUCGAGGAGCU CAGUCUAGUA \
UG AGGGACGGGAGUUCCUCGA GUCAGAUCAU C
CGGUGUCGCCCGCUCGUAC^ CU A- CCCUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Dno-Mir-28-P2_5p |
mirBase accession | MIMAT0047677 |
Sequence |
0- UCGAGGAGCUCACAGUCUAGUA -22
Get sequence
|
Star sequence |
Dno-Mir-28-P2_3p* |
mirBase accession | MIMAT0047678 |
Sequence |
35- CUAGACUGAAGCUCCUUGAGG -56
Get sequence
|