MirGeneDB ID | Dno-Mir-28-P3 |
Family name |
MIR-28 (all species) |
Seed |
AGGAGCU |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-708
|
Paralogues |
Dno-Mir-28-P1
Dno-Mir-28-P2
|
Orthologues |
Bta-Mir-28-P3
Cfa-Mir-28-P3
Cpo-Mir-28-P3
Ete-Mir-28-P3
Hsa-Mir-28-P3
Mml-Mir-28-P3
Mmu-Mir-28-P3
Ocu-Mir-28-P3
Rno-Mir-28-P3
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (dasNov3) |
JH568416: 1666120-1666188 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGCUGUGCGUGACGUGGUGACUGCCCUCAAGGAGCUUACAAUCUAGCUGGGGGUGAGAGACCUGCACAGGAUCUCAACUAGACUGGGAGCUUCUAGAGGGCAGGGGCCUUACCCUAGUCAUCUCUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUGCUGUGCGUGACGU--| GA A UA A C GGUGAGAGAC
GGU CUGCCCUC AGGAGCU CA UCUAG UGGG \
CCG GACGGGAG UCUUCGA GU AGAUC ACUC C
UCUCUCUACUGAUCCCAUU^ GG A GG C A UAGGACACGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Dno-Mir-28-P3_5p |
mirBase accession | MIMAT0048006 |
Sequence |
0- AAGGAGCUUACAAUCUAGCUGGG -23
Get sequence
|
Co-mature sequence |
Dno-Mir-28-P3_3p |
mirBase accession | MIMAT0048007 |
Sequence |
46- CAACUAGACUGGGAGCUUCUAGA -69
Get sequence
|