| MirGeneDB ID | Dpu-Mir-279-o4 |
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| Family name |
MIR-279 (all species) |
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| Seed |
GACUAGA |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
dpu-mir-279a
|
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| Paralogues |
Dpu-Mir-279-o1
Dpu-Mir-279-o2
Dpu-Mir-279-o3
Dpu-Mir-279-o5
Dpu-Mir-279-o6
|
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| Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Dma-Mir-279-o4
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Sme-Mir-279-P4
|
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| Node of Origin (locus) |
Daphnia
|
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| Node of Origin (family) |
Protostomia
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_43: 177501-177567 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAUUCCAUGGCGAAGGUUGGGCGCUCUCUAGGUGGGUCUGUUUCUAGUGCAUGUGUUUUCUCAGCGCGUCAUUCAUGACUAGAUCCAUACUCAUCUAAAGGGACCCAGCCAUUCUACAAUUUAAAUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAUUCCAUGGCGAAGGU---| CG C C UU G UGUUUUCUC
UGGG CUCU UAGGUGGGU UG UCUAGU CAUG A
ACCC GGGA AUCUACUCA AC AGAUCA GUAC G
UUAAAUUUAACAUCUUACCG^ A- A U CU - UUACUGCGC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. Note that There is a second Drosha cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Dpu-Mir-279-o4_5p* |
| mirBase accession | None |
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| Sequence |
0- GGUGGGUCUGUUUCUAGUGCAUG -23
Get sequence
|
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| Mature sequence |
Dpu-Mir-279-o4_3p |
| mirBase accession | MIMAT0012654 |
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| Sequence |
45- UGACUAGAUCCAUACUCAUCUA -67
Get sequence
|
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