MirGeneDB ID | Dpu-Mir-9-o15 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
dpu-mir-9
|
Paralogues |
Dpu-Mir-9-o16
|
Orthologues |
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cbr-Mir-9-P15
Cel-Mir-9-P15
Cin-Mir-9
Cte-Mir-9
Dma-Mir-9-o15
Esc-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Npo-Mir-9
Obi-Mir-9
Ovu-Mir-9
Pmi-Mir-9
Spu-Mir-9
Xbo-Mir-9
|
Node of Origin (locus) |
Daphnia
|
Node of Origin (family) |
Bilateria
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_2: 1526213-1526273 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGUGUCGUGGUCGUCAUGGCGCUGCUUUUUUCUUUGGUUAUCUAGCUGUAUGAGUGUUAGAAGACGUCAUAAAGCUAGGUUACCAAAGUUAAGAACUGCCCCUCUUCAUCGGCUAUUUUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
CGUGUCGUGGUCGUCAU----| CUG UUUU U G GUGUUA
GGCG CUU CUUUGGU AUCUAGCU UAUGA \
CCGU GAA GAAACCA UGGAUCGA AUACU G
UCUUUUAUCGGCUACUUCUCC^ CAA UU-- U A GCAGAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Dpu-Mir-9-o15_5p |
mirBase accession | MIMAT0012671 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Dpu-Mir-9-o15_3p* |
mirBase accession | None |
Sequence |
38- AUAAAGCUAGGUUACCAAAGUUA -61
Get sequence
|