MirGeneDB 2.1

MirGeneDB ID

Dpu-Mir-92-o46

Family name MIR-92 (all species)
Seed AUUGCAC
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-92-o47 
Orthologues Asu-Mir-92  Cel-Mir-92  Dma-Mir-92-o46  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Daphnia
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_38: 876143-876215 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGACUGCAUGUUAUUUGAUACGAAGGGUAGGCUUUGACUGGUGGCAAUUUUUCAUCUAUGCCUCGAAAUAUGGCAGAAAUAUUGCACUCGUCCCGGCCUGUCUUUUGUAUUCACAUUCGACGAUAUGUAAC
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Structure
        10          20        30        40        50        60      
AAAGACUGCAUGUUAUUU--|         GU     UU   U    G    UUUUCAUCUAUGCCU 
                    GAUACGAAGG  AGGCU  GAC GGUG CAAU               C
                    UUAUGUUUUC  UCCGG  CUG UCAC GUUA               G
CAAUGUAUAGCAGCUUACAC^         UG     CC   C    -    UAAAGACGGUAUAAA 
 130       120       110       100        90         80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Dpu-Mir-92-o46_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGCUUUGACUGGUGGCAAUUU -22
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Mature sequence

Dpu-Mir-92-o46_3p

mirBase accessionNone
Sequence
51- UAUUGCACUCGUCCCGGCCUGU -73
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