MirGeneDB ID | Dpu-Mir-92-o47 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
dpu-mir-92
|
Paralogues |
Dpu-Mir-92-o46
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Dma-Mir-92-o47
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
Daphnia
|
Node of Origin (family) |
Bilateria
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_38: 876332-876391 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCAAUUCACCUUGAUAGUCAACCUUAUGAAGGCUUUGACUUGGGCAACUUCGUUUAAAUGUUUGUCGAAUUGCACUCGUCCCGGCCUGCUUAACUGGACUAAAAAAACUUCAUAUGAUA
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCAAUUCACCUUGAUA---| AACC UGA UU UUGG C UUUAAA
GUC UUA AGGCU GAC GCAA UUCG \
CAG AAU UCCGG CUG CGUU AAGC U
AUAGUAUACUUCAAAAAAAU^ GUC- UCG CC CUCA - UGUUUG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dpu-Mir-92-o47_5p* |
mirBase accession | None |
Sequence |
0- AGGCUUUGACUUGGGCAACUUCG -23
Get sequence
|
Mature sequence |
Dpu-Mir-92-o47_3p |
mirBase accession | MIMAT0012672 |
Sequence |
38- AAUUGCACUCGUCCCGGCCUGC -60
Get sequence
|