MirGeneDB 2.1

MirGeneDB ID

Dpu-Novel-6

Family name DPU-NOVEL-6 (all species)
Seed CACUGGG
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) Daphnia
Node of Origin (family) Daphnia
Genome context
(Daphnia_pulex.V1.0)
CAJVNM010000013.1:1301350-1301500: 54-115 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUAUAAUUUGUUUAGUCGAGCCAAGCAUCAGGGGGGAACUUUACUCAGUUUGAUUCAUAUUAUAUGCAAAUCACUGGGUACGUUCGCCCUUGGUGAAUGAAUCUUAAACUUCUAUUUUGAAC
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Structure
        10          20        30        40        50        60  
GUAUAAUUUGUUUAGUC--| GC  AG         G    UU        UU    CAUAUU 
                   GA  CA  CAUCAGGGG GAAC  UACUCAGU  GAUU      \
                   CU  GU  GUGGUUCCC CUUG  AUGGGUCA  CUAA      A
CAAGUUUUAUCUUCAAAUU^ AA  AA         G    C-        --    ACGUAU 
120       110       100        90         80          70
Deep sequencing
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CommentDpu-Novel-6 is not in the Ensembl assembly but is in the latest assembly at Genbank (PA42 4.2)
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Dpu-Novel-6_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGGGGAACUUUACUCAGUUUGAUU -25
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Mature sequence

Dpu-Novel-6_3p

mirBase accessionNone
Sequence
40- UCACUGGGUACGUUCGCCCUUG -62
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