MirGeneDB 2.1

MirGeneDB ID

Dpu-Novel-9

Family name DPU-NOVEL-9 (all species)
Seed ACAUAAU
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) D. pulex
Node of Origin (family) D. pulex
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_87: 490784-490839 [+] Ensembl
Clustered miRNAs
(< 50kb from Novel-9)
Mir-96-P3 DAPPUscaffold_87: 475620-475711 [+] Ensembl
Mir-96-P2 DAPPUscaffold_87: 475817-475879 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUAGGAUGGUGGAUAAGCGUUCUAUGAUGCACAUAAUUUCGAAUGACUGGAUUGUAAUUUUCCCAUUCGUUCGAAAUUGUGACCAUCAUAUUGCGGUUUUUCACUAUCAUCUACG
Get precursor sequence
Structure
        10          20        30        40        50       
UCUAGGAUGGUGGAUAAG--|  UC       CA               C   AUUGU 
                    CGU  UAUGAUG  CAUAAUUUCGAAUGA UGG     A
                    GCG  AUACUAC  GUGUUAAAGCUUGCU ACC     A
GCAUCUACUAUCACUUUUUG^  UU       CA               U   CUUUU 
    110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Dpu-Novel-9_5p

mirBase accessionNone
Sequence
0- CACAUAAUUUCGAAUGACUGG -21
Get sequence
Star sequence

Dpu-Novel-9_3p*

mirBase accessionNone
Sequence
35- AUUCGUUCGAAAUUGUGACCA -56
Get sequence