MirGeneDB ID | Dre-Mir-194-P2a |
Family name |
MIR-194 (all species) |
Seed |
GUAACAG |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-194b
|
Paralogues |
Dre-Mir-194-P2b
|
Orthologues |
Aca-Mir-194-P2
Ami-Mir-194-P2
Bta-Mir-194-P2
Cfa-Mir-194-P2
Cpi-Mir-194-P2
Cpo-Mir-194-P2
Dno-Mir-194-P2
Ete-Mir-194-P2
Gja-Mir-194-P2
Gmo-Mir-194-P2a
Hsa-Mir-194-P2
Lch-Mir-194-P2
Loc-Mir-194-P2
Mal-Mir-194-P2a
Mml-Mir-194-P2
Mmu-Mir-194-P2
Mun-Mir-194-P2
Oan-Mir-194-P2
Ocu-Mir-194-P2
Pbv-Mir-194-P2
Rno-Mir-194-P2
Sha-Mir-194-P2
Spt-Mir-194-P2
Sto-Mir-194-P2
Tni-Mir-194-P2a
Xtr-Mir-194-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (danRer11) |
LKPD01021295.1: 6148-6206 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGACGUUGGACAUUGUUGGUGCUCGCUGGGUGUAACAGCCGCUCCAUGUGGAAAAUGCAUUCAAGUGCCCAUGGAGAAGCUGUUACCUGCAGAGAGUCACAUGUGACGGAAACCGGAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGACGUUGGACAUUGUUG- - G -| U CG U AAAAUGC
GUG CUC CUG GG GUAACAGC CUCCAUG GG A
CAC GAG GAC UC CAUUGUCG GAGGUAC CC U
GUAGGCCAAAGGCAGUGUA U A G^ - AA - GUGAACU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archives. |
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Mature sequence |
Dre-Mir-194-P2a_5p |
mirBase accession | MIMAT0001859 |
Sequence |
0- UGUAACAGCCGCUCCAUGUGGAA -23
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-194b
|
Star sequence |
Dre-Mir-194-P2a_3p* |
mirBase accession | None |
Sequence |
37- CCCAUGGAGAAGCUGUUACCUG -59
Get sequence
|