MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-194-P2b

Family name MIR-194 (all species)
Seed GUAACAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-194a
Paralogues Dre-Mir-194-P2a 
Orthologues Aca-Mir-194-P2  Ami-Mir-194-P2  Bta-Mir-194-P2  Cfa-Mir-194-P2  Cpi-Mir-194-P2  Cpo-Mir-194-P2  Dno-Mir-194-P2  Ete-Mir-194-P2  Gja-Mir-194-P2  Gmo-Mir-194-P2b  Hsa-Mir-194-P2  Lch-Mir-194-P2  Loc-Mir-194-P2  Mal-Mir-194-P2b  Mml-Mir-194-P2  Mmu-Mir-194-P2  Mun-Mir-194-P2  Oan-Mir-194-P2  Ocu-Mir-194-P2  Pbv-Mir-194-P2  Rno-Mir-194-P2  Sha-Mir-194-P2  Spt-Mir-194-P2  Sto-Mir-194-P2  Tni-Mir-194-P2b  Xtr-Mir-194-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr10: 27063188-27063244 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P2b)
Mir-194-P2b chr10: 27063188-27063244 [+] UCSC Ensembl
Mir-192-P2b chr10: 27063369-27063431 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAUCUGCAAAGACUUGGUGCUGACUGCUUGUAACAGCAACUCCAUGUGGAAGGUUUGUGUCUUCCAGUGGAGCUGCUGUUGCGUGCAGAUAGUCACCAUUAUCUGCUUUAUGCAU
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Structure
        10         20         30        40        50        
UCCAUCUGCAAAGACUU-    -|  A    U          A      G     GGUU 
                  GGUG CUG CUGC UGUAACAGCA CUCCAU UGGAA    U
                  CCAC GAU GACG GCGUUGUCGU GAGGUG ACCUU    G
UACGUAUUUCGUCUAUUA    U^  A    U          C      -     CUGU 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-194-P2b_5p

mirBase accessionMIMAT0001858
Sequence
0- UGUAACAGCAACUCCAUGUGGAA -23
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Proposed targets TargetScanFish: dre-miR-194a
Star sequence

Dre-Mir-194-P2b_3p*

mirBase accessionNone
Sequence
35- CCAGUGGAGCUGCUGUUGCGUG -57
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