MirGeneDB ID | Dre-Mir-455-P2 |
Family name |
MIR-455 (all species) |
Seed |
AUGUGCC |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-455-2
|
Paralogues |
Dre-Mir-455-P1
|
Orthologues |
Aca-Mir-455
Ami-Mir-455
Bta-Mir-455
Cfa-Mir-455
Cli-Mir-455
Cmi-Mir-455
Cpi-Mir-455
Cpo-Mir-455
Dno-Mir-455
Ete-Mir-455
Gga-Mir-455
Gja-Mir-455
Gmo-Mir-455-P2
Hsa-Mir-455
Lch-Mir-455
Loc-Mir-455
Mal-Mir-455-P2
Mdo-Mir-455
Mml-Mir-455
Mmu-Mir-455
Mun-Mir-455
Oan-Mir-455
Ocu-Mir-455
Pbv-Mir-455
Pma-Mir-455
Rno-Mir-455
Sha-Mir-455
Spt-Mir-455
Sto-Mir-455
Tgu-Mir-455
Tni-Mir-455-P2
Xtr-Mir-455
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (danRer11) |
chr16: 51776559-51776617 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUUUCCAUCGUUGUUCCCUGAAGUGAGGGUAUGUGCCCUUGGACUACAUUGUGGAGGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUACUUCAUGGCCUACAUCAACACGAAGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUUUCCAUCGUUGUUC-- -| G U A U UGGAG
CC UGAAGUGAG GUAUGUGCCC UGGACU CAU G G
GG ACUUCAUUC CAUAUACGGG ACCUGA GUA C C
CAGAAGCACAACUACAUCC U^ A U C C ACGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There are mutliple Dicer cuts on the 3p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Mature sequence |
Dre-Mir-455-P2_5p |
mirBase accession | MIMAT0011302 |
Sequence |
0- UAUGUGCCCUUGGACUACAUUG -22
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-455b
|
Star sequence |
Dre-Mir-455-P2_3p* |
mirBase accession | MIMAT0031993 |
Sequence |
36- AUGCAGUCCAUGGGCAUAUACAC -59
Get sequence
|