| MirGeneDB ID | Ebu-Mir-126-o1 |
|---|
| Family name |
MIR-126 (all species) |
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| Seed |
CGUACCG |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Pma-Mir-126-o1
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Olfactores
|
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Genome context
(Eburgeri_3) |
FYBX02010502.1: 55804-55863 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCCCUGAACUCUGCUCAGGCUCCACUCCUUCGUUAUUACCCCUGGUACUGGCUGAACUUUGACCCCAGUCGUACCGUCAGUAAUAACGGAGGGUUGAGGGUCAACCAGCAUCAGGCAGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCCUGAACUCUGCUCA- -| CU CCC U GAACUU
GGCUC CA CCUUCGUUAUUAC UGGUAC GGCU \
CUGGG GU GGAGGCAAUAAUG GCCAUG CUGA U
CCGACGGACUACGACCAA A^ UG ACU - CCCCAG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ebu-Mir-126-o1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGUUAUUACCCCUGGUACUGGCU -23
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-126-o1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UCGUACCGUCAGUAAUAACGGA -60
Get sequence
|
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