| MirGeneDB ID | Ebu-Mir-30-P2e |
|---|
| Family name |
MIR-30 (all species) |
|---|
| Seed |
GUAAACA |
|---|
| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
|---|
| Paralogues |
Ebu-Mir-30-P1e
Ebu-Mir-30-P1f
Ebu-Mir-30-P1g
Ebu-Mir-30-P2f
Ebu-Mir-30-P2g
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. burgeri
|
|---|
| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02010783.1: 5513674-5513736 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAUGUGAAUUGUGAUCCGUGGAACAGGCAAUGUAAACACCCUACACUCAGCUGUAUUGAUGUUUCGGACAAGCUGGGGGAGGGUGCUUACUCUGCCUGCCUCGGUGCUCCACCUCCGGUCAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAUGUGAAUUGUGAUCC----|U AA AU A ACA GUAUUGAU
G GG CAGGCA GUAA CACCCU CUCAGCU G
C CC GUCCGU CAUU GUGGGA GGGUCGA U
CUACUGGCCUCCACCUCGUGG^U -- CU C GG- ACAGGCUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Ebu-Mir-30-P2e_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUAAACACCCUACACUCAGCU -22
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-30-P2e_3p* |
| mirBase accession | None |
|---|
| Sequence |
41- GCUGGGGGAGGGUGCUUACUCU -63
Get sequence
|
|---|
