MirGeneDB 2.1

MirGeneDB ID

Efe-Mir-10-P1i

Family name MIR-10 (all species)
Seed ACCCUGU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-10-P1j  Efe-Mir-10-P2g  Efe-Mir-10-P2h  Efe-Mir-10-P2i  Efe-Mir-10-P2j  Efe-Mir-10-P2k  Efe-Mir-10-P3g  Efe-Mir-10-P3h  Efe-Mir-10-P3i  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Efe-Mir-10-P5a  Efe-Mir-10-P5b  Efe-Mir-10-P6  Efe-Mir-10-P7 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cgi-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lgi-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Sko-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2 
Node of Origin (locus) E. fetida
Node of Origin (family) Eumetazoa
Genome context
(Efe_combined)
Efet.01.83868: 1034-1091 [-]
Precursor
(pre-Mir +30nt flank)
GCUCUACAUGACAUUCGUCCUCACUUCGCAUACCCUGUAGAUCCGAAUUUGUGUUGACACUACGUACAAAUUCGUUUCUCGGGCGUAUAACGUUGUGUGAGGACCCGCCGUCAGUCAC
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Structure
        10        20           30         40        50         
GCUCUACAUGACAUUCGUCC    UU--  C-    -|   U   UC          UUGAC 
                    UCAC    CG  AUAC CCUG AGA  CGAAUUUGUG     \
                    AGUG    GC  UAUG GGGC UCU  GCUUAAACAU     A
CACUGACUGCCGCCCAGG--    UGUU  AA    C^   -   UU          GCAUC 
      110         100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Efe-Mir-10-P1i_5p

mirBase accessionNone
Sequence
0- UACCCUGUAGAUCCGAAUUUGUG -23
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Star sequence

Efe-Mir-10-P1i_3p*

mirBase accessionNone
Sequence
36- CAAAUUCGUUUCUCGGGCGUAU -58
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