MirGeneDB ID | Efe-Mir-10-P1j |
Family name |
MIR-10 (all species) |
Seed |
ACCCUGU |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-10-P1i
Efe-Mir-10-P2g
Efe-Mir-10-P2h
Efe-Mir-10-P2i
Efe-Mir-10-P2j
Efe-Mir-10-P2k
Efe-Mir-10-P3g
Efe-Mir-10-P3h
Efe-Mir-10-P3i
Efe-Mir-10-P4a
Efe-Mir-10-P4b
Efe-Mir-10-P4c
Efe-Mir-10-P5a
Efe-Mir-10-P5b
Efe-Mir-10-P6
Efe-Mir-10-P7
|
Orthologues |
Aae-Mir-10-P1-v1
Aae-Mir-10-P1-v2
Asu-Mir-10-P1
Bfl-Mir-10-P1-v1
Bfl-Mir-10-P1-v2
Bge-Mir-10-P1-v1
Bge-Mir-10-P1-v2
Bla-Mir-10-P1-v1
Bla-Mir-10-P1-v2
Cbr-Mir-10-P1
Cel-Mir-10-P1
Cgi-Mir-10-P1
Cte-Mir-10-P1
Dan-Mir-10-P1
Dma-Mir-10-P1-v1
Dma-Mir-10-P1-v2
Dme-Mir-10-P1
Dmo-Mir-10-P1
Dpu-Mir-10-P1-v1
Dpu-Mir-10-P1-v2
Dsi-Mir-10-P1
Dya-Mir-10-P1
Hme-Mir-10-P1-v1
Hme-Mir-10-P1-v2
Isc-Mir-10-P1-v1
Isc-Mir-10-P1-v2
Lgi-Mir-10-P1
Npo-Mir-10-P1
Nve-Mir-10
Pfl-Mir-10-P1
Pmi-Mir-10-P1
Sko-Mir-10-P1
Spu-Mir-10-P1
Tca-Mir-10-P1-v1
Tca-Mir-10-P1-v2
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Efe_combined) |
Efe-Mir-10-P1f_manual_assembly: 44-104 [+]
|
Precursor (pre-Mir +30nt flank) |
GACAUGGUUGUCUAGUGGCAGACCACUGCGUACCCUGUAGAACCGAGCUUGUGUCGUGUUUAGAUAUCACAAGCCUAGUCUACAGUGUUCACAGGAUCCGCCCCUUCAUCAGACAUUGUGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GACAUGGUUGUCUAGUG---| A CCA CGU C ACCGA GUCGUGU
GC GA CUG AC CUGUAGA GCUUGU U
CG CU GAC UG GACAUCU CGAACA U
UGUGUUACAGACUACUUCCC^ C AG- ACU U GAUC- CUAUAGA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Efe-Mir-10-P1j_5p |
mirBase accession | None |
Sequence |
0- UACCCUGUAGAACCGAGCUUGU -22
Get sequence
|
Star sequence |
Efe-Mir-10-P1j_3p* |
mirBase accession | None |
Sequence |
39- CAAGCCUAGUCUACAGUGUUCA -61
Get sequence
|