MirGeneDB 2.1

MirGeneDB ID

Efe-Mir-10-P1j

Family name MIR-10 (all species)
Seed ACCCUGU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-10-P1i  Efe-Mir-10-P2g  Efe-Mir-10-P2h  Efe-Mir-10-P2i  Efe-Mir-10-P2j  Efe-Mir-10-P2k  Efe-Mir-10-P3g  Efe-Mir-10-P3h  Efe-Mir-10-P3i  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Efe-Mir-10-P5a  Efe-Mir-10-P5b  Efe-Mir-10-P6  Efe-Mir-10-P7 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cgi-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lgi-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Sko-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2 
Node of Origin (locus) E. fetida
Node of Origin (family) Eumetazoa
Genome context
(Efe_combined)
Efe-Mir-10-P1f_manual_assembly: 44-104 [+]
Precursor
(pre-Mir +30nt flank)
GACAUGGUUGUCUAGUGGCAGACCACUGCGUACCCUGUAGAACCGAGCUUGUGUCGUGUUUAGAUAUCACAAGCCUAGUCUACAGUGUUCACAGGAUCCGCCCCUUCAUCAGACAUUGUGU
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Structure
        10           20        30        40        50        60
GACAUGGUUGUCUAGUG---| A  CCA   CGU  C       ACCGA      GUCGUGU 
                    GC GA   CUG   AC CUGUAGA     GCUUGU       U
                    CG CU   GAC   UG GACAUCU     CGAACA       U
UGUGUUACAGACUACUUCCC^ C  AG-   ACU  U       GAUC-      CUAUAGA 
 .       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Efe-Mir-10-P1j_5p

mirBase accessionNone
Sequence
0- UACCCUGUAGAACCGAGCUUGU -22
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Star sequence

Efe-Mir-10-P1j_3p*

mirBase accessionNone
Sequence
39- CAAGCCUAGUCUACAGUGUUCA -61
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