| MirGeneDB ID | Efe-Novel-3 |
|---|
| Family name |
EFE-NOVEL-3 (all species) |
|---|
| Seed |
AUGUGAC |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
E. fetida
|
|---|
Genome context
(Efe_combined) |
Efet.01.141380: 5618-5675 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGCAAAGGUGGUCGAUAGCGCAGCCAUUCCUCUGAGUCUGGCGUCACAUACAUGUAUUAAGGAAUGUAUGUGACACCAGAAUCAGUGGAAGUAUAUCNNNNNNNNNNNNNNNNNNNNN
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGCAAAGGUGGUCGAUAGCGCAGCCA--| U G C UGUAU
UUCC CUGA UCUGG GUCACAUACA U
AAGG GACU AGACC CAGUGUAUGU A
NNNNNNNNNNNNNNNNNNNNNCUAUAUG^ U A A AAGGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Efe-Novel-3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCUGAGUCUGGCGUCACAUACA -22
Get sequence
|
|---|
| Mature sequence |
Efe-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UAUGUGACACCAGAAUCAGUGG -58
Get sequence
|
|---|
