| MirGeneDB ID | Esc-Mir-12520 |
|---|
| Family name |
MIR-12520 (all species) |
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| Seed |
CCUUGAU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Mir-12520
Ovu-Mir-12520
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-23_pre_SRIE01038711.1:71383-71638: 101-156 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUUGGGCCGAUUCAAGGAUUGAGUUGUCUCCCUUGAUUUCUCUGCCACUCCUUUAUUGGCUGAAGUGUCUGAGGAAUCAUGUGAGUUGACCAAUCAGAUUACACCAUCUGAGACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUUGGGCCGAUUCAAG---| A U CCU UGC CCUUUA
GAUUG GUUG CUC UGAUUUCUC CACU U
CUAAC CAGU GAG ACUAAGGAG GUGA U
GCAGAGUCUACCACAUUAGA^ - U UGU UCU AGUCGG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Esc-Mir-12520_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CCCUUGAUUUCUCUGCCACUCC -22
Get sequence
|
|---|
| Star sequence |
Esc-Mir-12520_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- AGUGUCUGAGGAAUCAUGUGAG -56
Get sequence
|
|---|
