| MirGeneDB ID | Esc-Mir-12538 |
|---|
| Family name |
MIR-12538 (all species) |
|---|
| Seed |
UCCGGAG |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Mir-12538
Ovu-Mir-12538
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-41_pre_SRIE01055741.1:12626161-12626417: 101-157 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGCCAAGAAAGGACGACACGAUGCUAGUAUUUCCGGAGUUUCACACCCAUCAGAUCAGUCAACUAAUGGAUGUGAACCUCCAGAAAAACUCGCUUUGAUCUCACCAACAUUUCCAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCCAAGAAAGGACGACA--| U U A C U C CAGAUCA
CGA GC AGU UUUC GGAG UUCACA CCAU \
GUU CG UCA AAAG CCUC AAGUGU GGUA G
AGACCUUUACAACCACUCUA^ U C A A C A AUCAACU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Mir-12538_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCCGGAGUUUCACACCCAUCA -22
Get sequence
|
|---|
| Star sequence |
Esc-Mir-12538_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- AUGGAUGUGAACCUCCAGAAAA -57
Get sequence
|
|---|
