| MirGeneDB ID | Esc-Mir-12539 |
|---|
| Family name |
MIR-12539 (all species) |
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| Seed |
CUGUGCA |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Obi-Mir-12539
Ovu-Mir-12539
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-42_pre_SRIE01034982.1:9932363-9932635: 101-173 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAUUACCAAGAGAGAACCAAUUAAAGCACCCUGUGCAAAAAGUCGUUAAGCCGUUGAGCCAAGCGACAAGAUGAUUGGCUUAGCAACUUCAUUGCAUGGAGUGUUUCGAUUGGUCUAAACAUCAACCAAUGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAAUUACCAAGAGAGAA-- UA C A-| C CGUUGAGCCAAG
CCAAU AAGCAC CUGUGCAA AAGU GUUAAGC C
GGUUA UUUGUG GGUACGUU UUCA CGAUUCG G
AGUAACCAACUACAAAUCU GC A AC^ A GUUAGUAGAACA
130 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Esc-Mir-12539_5p |
| mirBase accession | None |
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| Sequence |
0- CCUGUGCAAAAAGUCGUUAAGC -22
Get sequence
|
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| Star sequence |
Esc-Mir-12539_3p* |
| mirBase accession | None |
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| Sequence |
50- UUAGCAACUUCAUUGCAUGGAGU -73
Get sequence
|
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