| MirGeneDB ID | Esc-Mir-12541 |
|---|
| Family name |
MIR-12541 (all species) |
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| Seed |
UCGGCUC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Mir-12541
Ovu-Mir-12541
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-44_pre_SRIE01001414.1:548789-549052: 101-164 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCAGACGCAGUAGAUUAUUUAAAUAUACCAAAGAAUCACCAUGAGCCGGGGUCGUAUUUUAAUCUUGGCGCGAUCGGCUCGAGGCAGUUCUUCGGCAUAUUUGACAUCACUCAACACACCUUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCAGACGCAGUAGAUUAU--| A A CA A GG UAUUUUA
UUAAAUAU CC AAGAAU CC UGAGCCG GUCG A
AGUUUAUA GG UUCUUG GG GCUCGGC UAGC U
AAUUCCACACAACUCACUAC^ C C AC A -- GCGGUUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Esc-Mir-12541_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAGAAUCACCAUGAGCCGGGGUCG -24
Get sequence
|
|---|
| Mature sequence |
Esc-Mir-12541_3p |
| mirBase accession | None |
|---|
| Sequence |
42- AUCGGCUCGAGGCAGUUCUUCG -64
Get sequence
|
|---|
