| MirGeneDB ID | Esc-Mir-12543 |
|---|
| Family name |
MIR-12543 (all species) |
|---|
| Seed |
CUCCAAC |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Mir-12543
Ovu-Mir-12543
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-46_pre_SRIE01018097.1:4821199-4821339: 41-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GACCACGAAGAGACUGACAACUUGGGGGUUUCUCCAACCAAUUUUCGGUACCUUAAUAUAUCAAGUGUGGUACCAAAGAUGAUUGGAGAGAUCCCCCAUAGUUUGAUGAUCAUCCUUUCGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GACCACGAAGAGACUGAC - -| CCA C UUAAUAU
AACU UGGGGG UUUCUCCAA AUUUU GGUACC A
UUGA ACCCCC AGAGAGGUU UAGAA CCAUGG U
GGCUUUCCUACUAGUAGU U U^ AG- A UGUGAAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Although the 3' uridine is templated this give a three 3-nt offset. |
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Mir-12543_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCUCCAACCAAUUUUCGGUACC -22
Get sequence
|
|---|
| Star sequence |
Esc-Mir-12543_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- UACCAAAGAUGAUUGGAGAGA -61
Get sequence
|
|---|
