MirGeneDB ID | Esc-Mir-2-o20-v1 |
Family name |
MIR-2 (all species) |
Seed |
CACAGCC |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Mir-2-o20-v2
Esc-Mir-2-o21
Esc-Mir-2-o22h
Esc-Mir-2-o22i
Esc-Mir-2-o22j
Esc-Mir-2-o22k
Esc-Mir-2-o23-v1
Esc-Mir-2-o23-v2
Esc-Mir-2-o24
|
Orthologues |
Npo-Mir-2-o20
Obi-Mir-2-o20-v1
Obi-Mir-2-o20-v2
Ovu-Mir-2-o20-v1
Ovu-Mir-2-o20-v2
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-2-o20-v1_pre_SRIE01000454.1:381798-382057: 101-160 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAAACCUGUAUGAGGAGCAGGUUGCGAAGGCAUCAAUGCUGGAUGUCAUAGUAAUCUCCUUGGCCUAUCACAGCCAGCUUUGAUGAGCCUCGUCUCCUGCCAAGCAUCACUGACUUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAAACCUGUAUGAGGA-- UU A --| U A C GUAAUCU
GCAGG GCG AGGC AUCAA GCUGG UGU AUA \
CGUCC UGC UCCG UAGUU CGACC ACA UAU C
UUUUUCAGUCACUACGAAC UC - AG^ U G C CCGGUUC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Mir-2-o20-v1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCAUCAAUGCUGGAUGUCAUA -21
Get sequence
|
Mature sequence |
Esc-Mir-2-o20-v1_3p |
mirBase accession | None |
Sequence |
38- UCACAGCCAGCUUUGAUGAGCC -60
Get sequence
|