MirGeneDB ID | Esc-Mir-2-o22j |
Family name |
MIR-2 (all species) |
Seed |
CACAGCU |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Mir-2-o20-v1
Esc-Mir-2-o20-v2
Esc-Mir-2-o21
Esc-Mir-2-o22h
Esc-Mir-2-o22i
Esc-Mir-2-o22k
Esc-Mir-2-o23-v1
Esc-Mir-2-o23-v2
Esc-Mir-2-o24
|
Orthologues |
|
Node of Origin (locus) |
E. scolopes
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-2-o22j_pre_SRIE01000454.1:383389-383648: 101-160 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUUUAACCUUUGACCUAAGCCGAUUGCAACUCCUCAAAGGGCUGUGAUACGCUGCCAAUAUGACAUAUCACAGCUAGCUUUGAUGAGCUGGAAUAUGGUUCUCUUGCACAUAAGUUGUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUUUAACCUUUGACCUA- - G A C --| CGCUGCC
AGCCG AUU CA CUC UCAAAG GGCUGUGAUA A
UUGGU UAA GU GAG AGUUUC UCGACACUAU A
CUGUUGAAUACACGUUCUC A G C U GA^ ACAGUAU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Esc-Mir-2-o22j_5p* |
mirBase accession | None |
Sequence |
0- CUCCUCAAAGGGCUGUGAUACG -22
Get sequence
|
Mature sequence |
Esc-Mir-2-o22j_3p |
mirBase accession | None |
Sequence |
38- UCACAGCUAGCUUUGAUGAGCU -60
Get sequence
|