| MirGeneDB ID | Esc-Mir-2-o23-v1 |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
CACAGCC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
Esc-Mir-2-o20-v1
Esc-Mir-2-o20-v2
Esc-Mir-2-o21
Esc-Mir-2-o22h
Esc-Mir-2-o22i
Esc-Mir-2-o22j
Esc-Mir-2-o22k
Esc-Mir-2-o23-v2
Esc-Mir-2-o24
|
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| Orthologues |
Npo-Mir-2-o23
Obi-Mir-2-o23
Ovu-Mir-2-o23-v1
Ovu-Mir-2-o23-v2
|
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| Node of Origin (locus) |
Cephalopoda
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-2-o23-v1_pre_SRIE01000454.1:384530-384793: 101-164 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGGGGAUCAAGCUGACUUCUCUGUUUUGGGUCACCAAAGUGGUGGUGAUGUGUUUCUAAUUCCAUUCCCAUAUCACAGCCAGCUUUGAUGAGCUCAAACAUGAGACUCGGCCUACAAUGGCUAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGGGGAUCAAGCUGACU-- - U G C -| G UGUUUCUAA
UCUC UGUUU GG UCA CAAAG UGGU GUGAUG U
AGAG ACAAA UC AGU GUUUC ACCG CACUAU U
GAUCGGUAACAUCCGGCUC U C G A G^ A ACCCUUACC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Esc-Mir-2-o23-v1_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UCACCAAAGUGGUGGUGAUG -20
Get sequence
|
|---|
| Mature sequence |
Esc-Mir-2-o23-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UCACAGCCAGCUUUGAUGAGCU -64
Get sequence
|
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