MirGeneDB ID | Esc-Novel-1 |
Family name |
CEP-NOVEL-1 (all species) |
Seed |
GGGGAUG |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Npo-Novel-1
Obi-Novel-1
Ovu-Novel-1
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Cephalopoda
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-1_pre_SRIE01008808.1:1274484-1274624: 41-101 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACCAAUAUACUGAUUUCCGUUUUAGGAAGUGCCCUUCACAGGUAUCUCCUGGUUUAAUAUGAUGCCCUGGGGAUGCUGUGAAUGGUUAUUUCCUGGAACGGUCGCUAACACCUUUGAUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AACCAAUAUACUGAUUU-- -| C G U- UUUAA
CCGUUUUAGGAAGU GCC UUCACAG UAUCUCC GG U
GGCAAGGUCCUUUA UGG AAGUGUC GUAGGGG CC A
UAUAGUUUCCACAAUCGCU U^ U - UC GUAGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Esc-Novel-1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UGCCCUUCACAGGUAUCUCCUGG -23
Get sequence
|
Mature sequence |
Esc-Novel-1_3p |
mirBase accession | None |
Sequence |
38- UGGGGAUGCUGUGAAUGGUUAUU -61
Get sequence
|