| MirGeneDB ID | Esc-Novel-11 |
|---|
| Family name |
ESC-NOVEL-11 (all species) |
|---|
| Seed |
AAAUGCG |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
E. scolopes
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-66_pre_SRIE01033836.1:677295-677556: 101-162 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGAGGUAAUUGGAAAAGCCGGUGUAAGGGAAGCGGAUCUUGGCGCGUUUUUUCAUAAUAAUUCGAAAGUGAAAAUGCGUCAAGAUUUGCUGCUCUUGCAUAGUUCAUUCAACUCACCCAUCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGAGGUAAUUGGAAAAGCCG--| A UCAUAAUA
GUGUAAGGG AGCGGAUCUUGGCGCGUUUUU A
UACGUUCUC UCGUUUAGAACUGCGUAAAAG U
GCUACCCACUCAACUUACUUGA^ G UGAAAGCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-11_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCGGAUCUUGGCGCGUUUUUU -22
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-11_3p |
| mirBase accession | None |
|---|
| Sequence |
40- AAAAUGCGUCAAGAUUUGCUGC -62
Get sequence
|
|---|
