| MirGeneDB ID | Esc-Novel-40 |
|---|
| Family name |
COL-NOVEL-40 (all species) |
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| Seed |
UAAACCC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Obi-Novel-40
Ovu-Novel-40
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-40_pre_SRIE01011786.1:8006256-8006396: 41-101 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GACACAAUUUGUAACUAGUCGUGAUUAACGAGGGUAUAAAACGGGAUCUAUGCCUGAAGAUUUCUGCGCCUAAACCCGUUUGUUAUCCUUGUUAAGCGUGGAACUUUCCUCAGACGAGCGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GACACAAUUUGUAACUAG--| A UA AUC U CUGAAG
UCGUG UUAACGAGGGUA AAACGGG UA GC A
GGUGC AAUUGUUCCUAU UUUGCCC AU CG U
UGCGAGCAGACUCCUUUCAA^ G UG AA- C CGUCUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Esc-Novel-40_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGUAUAAAACGGGAUCUAUGC -23
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-40_3p |
| mirBase accession | None |
|---|
| Sequence |
39- CUAAACCCGUUUGUUAUCCUUG -61
Get sequence
|
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