MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-42

Family name COL-NOVEL-42 (all species)
Seed CUGUGCA
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Obi-Novel-42  Ovu-Novel-42 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-42_pre_SRIE01034982.1:9932363-9932635: 101-173 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUUACCAAGAGAGAACCAAUUAAAGCACCCUGUGCAAAAAGUCGUUAAGCCGUUGAGCCAAGCGACAAGAUGAUUGGCUUAGCAACUUCAUUGCAUGGAGUGUUUCGAUUGGUCUAAACAUCAACCAAUGA
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Structure
        10          20        30        40         50        60     
AAAUUACCAAGAGAGAA--     UA      C        A-|   C       CGUUGAGCCAAG 
                   CCAAU  AAGCAC CUGUGCAA  AAGU GUUAAGC            C
                   GGUUA  UUUGUG GGUACGUU  UUCA CGAUUCG            G
AGUAACCAACUACAAAUCU     GC      A        AC^   A       GUUAGUAGAACA 
 130       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-42_5p

mirBase accessionNone
Sequence
0- CCUGUGCAAAAAGUCGUUAAGC -22
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Star sequence

Esc-Novel-42_3p*

mirBase accessionNone
Sequence
50- UUAGCAACUUCAUUGCAUGGAGU -73
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