MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-50

Family name COL-NOVEL-50 (all species)
Seed GUCUCAU
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Obi-Novel-50  Ovu-Novel-50 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-50_pre_SRIE01047148.1:1408822-1408965: 44-101 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGUUCUAUAUUACCACCUGCUGAUUUCUAUUGUCUCAUGUAUUGGAAUGUUGCCUCAGUUUCACCAACAUUCCAGUGCCUGAGUCAUAGACAACAGUACCUCACAUCUCAUCUUCAUC
Get precursor sequence
Structure
        10           20        30        40        50        
GGUUCUAUAUUACCACC---|    AUU     U U    U              CCUCA 
                    UGCUG   UCUAU G CUCA GUAUUGGAAUGUUG     G
                    AUGAC   AGAUA C GAGU CGUGACCUUACAAC     U
CUACUUCUACUCUACACUCC^    AAC     - U    C              CACUU 
      110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-50_5p

mirBase accessionNone
Sequence
0- UGUCUCAUGUAUUGGAAUGUUG -22
Get sequence
Star sequence

Esc-Novel-50_3p*

mirBase accessionNone
Sequence
36- ACAUUCCAGUGCCUGAGUCAUA -58
Get sequence