| MirGeneDB ID | Esc-Novel-65 |
|---|
| Family name |
ESC-NOVEL-65 (all species) |
|---|
| Seed |
GUUGGAC |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
E. scolopes
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-65_pre_SRIE01030346.1:857580-857727: 48-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGAAUUAAGUUCAGUGGCAGCGGCAAGUAGUGUUGGACGGCGGUCGGGCGGGAGGCGUUAGCUCGCUCGCCACGGUCCAUCGCUCUUUGCUGCUUAAAUACUACAUUAAUUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAAUUAAGUUCAGUGGC-- U U ---| GU GGGAG
AGCGGCAAG AGUG UGGAC GGCG CGGGC \
UCGUCGUUU UCGC ACCUG CCGC GCUCG G
UUUUUAAUUACAUCAUAAAU C U GCA^ UC AUUGC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-65_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUUGGACGGCGGUCGGGCGGGA -23
Get sequence
|
|---|
| Star sequence |
Esc-Novel-65_3p* |
| mirBase accession | None |
|---|
| Sequence |
32- UCGCUCGCCACGGUCCAUCGCU -54
Get sequence
|
|---|
