MirGeneDB ID | Ete-Mir-28-P2 |
Family name |
MIR-28 (all species) |
Seed |
CGAGGAG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-28-P1
Ete-Mir-28-P3
|
Orthologues |
Bta-Mir-28-P2
Cfa-Mir-28-P2
Cpo-Mir-28-P2
Dno-Mir-28-P2
Hsa-Mir-28-P2
Mml-Mir-28-P2
Mmu-Mir-28-P2
Ocu-Mir-28-P2
Rno-Mir-28-P2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980295: 2602086-2602140 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GCCCAGCUGACUGAGACACUCUUCCUGCCCUCGAGGAGCUCACAGUCUAGUACGUGCCACCCUACUAGACUGGCGCUCCUUGAGGACAGGGGUCGUCAUACUCGCCCGCGUGCAG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCCCAGCUGACUGAGAC--| UC C UCA CGUG
AC UUCCUG CCUCGAGGAGC CAGUCUAGUA C
UG GGGGAC GGAGUUCCUCG GUCAGAUCAU C
GACGUGCGCCCGCUCAUAC^ CU A CG- CCCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-28-P2_5p |
mirBase accession | None |
Sequence |
0- UCGAGGAGCUCACAGUCUAGUA -22
Get sequence
|
Star sequence |
Ete-Mir-28-P2_3p* |
mirBase accession | None |
Sequence |
34- CUAGACUGGCGCUCCUUGAGG -55
Get sequence
|