MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-28-P2

Family name MIR-28 (all species)
Seed CGAGGAG
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-28-P1  Ete-Mir-28-P3 
Orthologues Bta-Mir-28-P2  Cfa-Mir-28-P2  Cpo-Mir-28-P2  Dno-Mir-28-P2  Hsa-Mir-28-P2  Mml-Mir-28-P2  Mmu-Mir-28-P2  Ocu-Mir-28-P2  Rno-Mir-28-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980295: 2602086-2602140 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCCCAGCUGACUGAGACACUCUUCCUGCCCUCGAGGAGCUCACAGUCUAGUACGUGCCACCCUACUAGACUGGCGCUCCUUGAGGACAGGGGUCGUCAUACUCGCCCGCGUGCAG
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Structure
        10          20        30        40        50       
GCCCAGCUGACUGAGAC--| UC      C           UCA          CGUG 
                   AC  UUCCUG CCUCGAGGAGC   CAGUCUAGUA    C
                   UG  GGGGAC GGAGUUCCUCG   GUCAGAUCAU    C
GACGUGCGCCCGCUCAUAC^ CU      A           CG-          CCCA 
   110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ete-Mir-28-P2_5p

mirBase accessionNone
Sequence
0- UCGAGGAGCUCACAGUCUAGUA -22
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Star sequence

Ete-Mir-28-P2_3p*

mirBase accessionNone
Sequence
34- CUAGACUGGCGCUCCUUGAGG -55
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